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About the Programme Academic Staff Program Qualifications Lessons Matrix of Course & Program Qualifications Turkish Qualifications Framework (TQF) TQF & Program Qualifications
  1. Graduate School
  2. Department of Pharmaceutical Chemistry
  3. PhD in Pharmaceutical Chemistry
  4. Course Structure Diagram with Credits
  5. Molecular Modelling in Drug Research
  6. Description
  • Description
  • Learning Outcomes
  • ECTS Credit Load
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Last Updated: 30/09/2026

Code - Course Title Course Type Laboratory + Practice ECTS
FKM629 - Molecular Modelling in Drug Research II. SEMESTER 3 +0 7.5
Language of Instruction Türkçe
Course Type Elective Courses
Course Instructor(s) DOÇ. DR. ASAF EVRİM EVREN
Mode of Delivery The mode of delivery of this course is Face to face
Place of Delivery
Used Educational Platforms
Prerequisites The students who selected this course should take and pass the Pharmaceutical Chemistry (at least -I, -II) courses on Pharmacy Training Programme and should know the concept of structure-activity, should know and use effectively 2- and 3-D Chemical Draw Programmes
Courses Recomended Students who take this course should have taken at least ECZ301-Pharmaceutical Chemistry I and ECZ302-Pharmaceutical Chemistry II courses.
Recommended Resources - All scientific articles/papers related to topics on Molecular Modelling in Drug Research (via SciFinder and Web of Science)- MOE software package (https://www.chemcomp.com) - Schrodinger Training suites (https://www.schrodinger.com)- Merck Index- RxMediaPharma® 2018 Interactive Drug Information Source, General Editor: Prof. Dr. Levent Üstünes.
Work Placement Lessons are limited because of the fact that after the basic information is given in the first weeks, it is done practically at the computer. It is recommended that students have portable computers. It is expected that they will be able to download some free programs to their computers and research on them.
Aims of the Course

Weeks Learning Outcomes Topics Teaching Methods
Week - 1 Computer techniques for development and optimization of “Leading structure” on the drug researches
Week - 2 Computer techniques for development and optimization of “Leading structure” on the drug researches
Week - 3 Molecular modelling
Week - 4 Molecular imaging programmes
Week - 5 Molecular imaging programmes
Week - 6 Molecular model design via mathematical methods
Week - 7 Recognition of interactions between molecules
Week - 8 Simulation techniques (Molecular Dinamic)
Week - 9 simulation techniques (Monte Carlo)
Week - 10 Simülasyon teknikleri (Enerji minimizasyonu)
Week - 11 Comparative modelling
Week - 12 Drug design
Week - 13 Drug design
Week - 14 Chemoinformatics

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Assessment Method and Passing Requirements
Quamtity Percentage (%)
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