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  • Molecular Docking and Dynamics Simulation in Medicinal Chemistry
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Course Title Code Compulsory/Elective Laboratory + Practice ECTS
Molecular Docking and Dynamics Simulation in Medicinal Chemistry FKM534 II. SEMESTER 3+0 6.0
Language of Instruction Türkçe
Course Type Elective Courses
Course Instructor(s) DOÇ. DR. BEGÜM NURPELİN SAĞLIK ÖZKAN
Mode of Delivery Face to face learning
Prerequisites There is no prerequisite or co-requisite for this course.
Courses Recomended There is no recommended optional program component for this course.
Recommended Reading List 1. Hinchliffe, A., "Molecular Modeling for Beginners", Wiley, Manchester, UK, 2008.2. Ramachandran, K.I., et al, "Computational Chemistry and Molecular Modeling", Springer, 2008.3. Muchmore, S.W., et al, "Chemoinformatics Tools for Medicinal Chemists", J. Med. Chem. (2010) 53, 4830-4841.4. Schlick, T., "Molecular Modeling and Simulation: An Interdisciplinary Guide" Springer, 2010.5. Redhu, S., Jindal, A.," Molecular Modeling: A New Scaffold for Drug Design, Int J Pharm Pharm Sci (2013) 5, 5-8.6. Scoichet, B.K., et al, "Lead Discovery Using Molecular Docking", Current Opin Chem Biol (2002) 6,439-446.
Assessment methods and criteria 1 Midterm exam, 1 homework, 1 final exam
Work Placement Work placement is not applicable.
Catalog Content Molecular Modeling: Molecular modeling approaches, Examples in drug design, Molecular modeling programs, Interaction analysis, Two-dimensional representation, Three-dimensional representation; Protein Data Bank; Molecular Docking: Ligand preparation, Related crystal selection, Protein preparation, Active site selection, Statistical analysis, Scoring, Molecular docking applications; Molecular Dynamics Simulation: Output analysis, Video analysis, Molecular dynamics applications.

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